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The Resource c-di-GMP signaling : methods and protocols, edited by Karin Sauer

c-di-GMP signaling : methods and protocols, edited by Karin Sauer

c-di-GMP signaling : methods and protocols
c-di-GMP signaling
Title remainder
methods and protocols
Statement of responsibility
edited by Karin Sauer
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index present
Literary form
non fiction
Nature of contents
  • dictionaries
  • bibliography
Series statement
Methods in molecular biology,
Series volume
volume 1657
c-di-GMP signaling : methods and protocols, edited by Karin Sauer
c-di-GMP signaling : methods and protocols, edited by Karin Sauer
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Bibliography note
Includes bibliographical references and index
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online resource
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  • Identification and quantification of cyclic di-guanosine monophosphate and its linear metabolites by reversed-phase LC-MS/MS
  • Heike Bahre and Volkhard Kaever
  • Detection of cyclic dinucleotides by STING
  • Xiao-Xia Du and Xiao-Dong Su
  • Spectrophotometric and mass spectroscopic methods for the quantification and kinetic evaluation of in vitro c-di-GMP synthesis
  • Geoffrey B. Severin and Christopher M. Waters
  • Gauging and visualizing c-di-GMP levels in Pseudomonas aeruginosa using fluorescence-based biosensors
  • Morten Rybtke, Song Lin Chua, Joey Kuok Hoong Yam, Michael Givskov, Liang Yang, and Tim Tolker-Nielsen
  • Cyclic di-GMP-responsive transcriptional reporter bioassays in Pseudomonas aeruginosa
  • Bradley R. Borlee, Grace I. Borlee, Kevin H. Martin, and Yasuhiko Irie
  • Discovery of the second messenger Cyclic di-GMP
  • Live flow cytometry analysis of c-di-GMP levels in single cell populations
  • ongchan Yeo, Xin C. Wang, and Ming C. Hammond
  • Experimental detection and visualization of the extracellular matrix in macrocolony biofilms
  • Diego O. Serra and Regine Hengge
  • Congo red stain identifies matrix overproduction and is an indirect measurement for c-di-GMP in many species of bacteria
  • Christopher J. Jones and Daniel J. Wozniak
  • Type IV Pili-dependent motility as a tool to determine the activity of c-di-GMP modulating enzymes in Myxococcus xanthus
  • Dorota Skotnicka and Lotte Søgaard-Andersen
  • Using light-activated enzymes for modulating intracellular c-di-GMP levels in bacteria
  • Min-Hyung Ryu, Anastasia Fomicheva, Lindsey O'Neal, Gladys Alexandre, and Mark Gomelsky
  • Ute Romling and Michael Y. Galperin
  • Analysis of c-di-GMP levels synthesized by a photoreceptor protein in response to different light qualities using an in vitro enzymatic assay
  • Veronika Angerer, Lars-Oliver Essen, and Annegret Wilde
  • Probing the role of cyclic di-GMP signaling systems in disease using Chinese radish
  • Shi-Qi An, Ji-Liang Tang, and J. Maxwell Dow
  • Contribution of cyclic di-GMP in the control of type III and type VI secretion in Pseudomonas aeruginosa
  • Ronan R. McCarthy, Martina Valentini, and Alain Filloux
  • Semiquantitative analysis of the red, dry, and rough colony morphology of Salmonella enterica serovar typhimurium and Escherichia coli using congo red
  • Annika Cimdins and Roger Simm
  • Fluorescent 2-aminopurine c-di-GMP and GpG analogs as PDE probes
  • Jie Zhou, Clement Opoku-Temeng, and Herman O. Sintim
  • Enzymatic production of c-di-GMP using a thermophilic diguanylate cyclase
  • Measuring cyclic diguanylate (c-di-GMP)-specific phosphodiesterase activity Using the MANT-c-di-GMP assay
  • Dorit Eli, Trevor E. Randall, Henrik Almblad, Joe J. Harrison, and Ehud Banin
  • Determining phosphodiesterase activity (radioactive assay)
  • Barbara I. Kazmierczak
  • Determining diguanylate cyclase activity (radioactive assay)
  • Barbara I. Kazmierczak
  • Detection of c-di-GMP-responsive DNA binding
  • Jacob R. Chambers and Karin Sauer
  • Use of nonradiochemical DNAse footprinting to analyze c-di-GMP modulation of DNA-binding proteins
  • Claudine Baraquet and Caroline S. Harwood
  • Prabhadevi Venkataramani and Zhao-Xun Liang
  • Detection of cyclic di-GMP binding proteins utilizing a biotinylated cyclic di-GMP pull-down assay
  • Jacob R. Chambers and Karin Sauer
  • Probing protein-protein interactions with genetically encoded photoactivatable cross-linkers
  • Richard B. Cooley and Holger Sondermann
  • Identification of c-di-AMP-binding proteins using magnetic beads
  • Jan Kampf, Jan Gundlach, Christina Herzberg, Katrin Treffon, and Jorg Stulke
  • Pull-down with a c-di-GMP-specific capture compound coupled to mass spectrometry as a powerful tool to identify novel effector proteins
  • Benoıt-Joseph Laventie, Timo Glatter, and Urs Jenal
  • Identification of c-di-GMP-responsive riboswitches
  • Johann Peltier and Olga Soutourina
  • Synthesis of [32P]-c-di-GMP for diguanylate cyclase and phosphodiesterase activity determinations
  • Isothermal titration calorimetry to determine apparent dissociation constants (Kd) and stoichiometry of interaction (n) of C-di-GMP binding proteins
  • Bruno Y. Matsuyama, Petya V. Krasteva, and Marcos V.A.S. Navarro
  • Targeting c-di-GMP signaling, biofilm formation, and bacterial motility with small molecules
  • Clement Opoku-Temeng and Herman O. Sintim
  • Discovering selective diguanylate cyclase inhibitors : from PleD to discrimination of the active site of Cyclic-di-GMP phosphodiesterases
  • S. Rinaldo, G. Giardina, F. Mantoni, A. Paiardini, Alessio Paone, and Francesca Cutruzzola
  • High-throughput screening for compounds that modulate the cellular c-di-GMP level in bacteria
  • Julie Groizeleau, Jens Bo Andersen, Michael Givskov, Jens Berthelsen, and Tim Tolker-Nielsen
  • Genetic tools to study c-di-GMP-dependent signaling in Pseudomonas aeruginosa
  • Livia Leoni, Sarika Vishnu Pawar, and Giordano Rampioni
  • Barbara I. Kazmierczak
  • High-performance liquid chromatography (HPLC)-based detection and quantitation of cellular c-di-GMP
  • Olga E. Petrova and Karin Sauer
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1 online resource (xiv, 486 pages)
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illustrations (some color)
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